Week 11

Done and To-Do

  • Meeting with Jaan about ClinicalBERT, notes here.
  • We chatted about:
      1. building dashboards for predictive models that can help clinicians (e.g. displaying the data using https://superset.apache.org/)
      1. simple models that can help detect features predictive of suicide attempt
      1. longer-term strategy for deploying models that work across EHR data structured in different ways, in different health systems
  • To Do: connect with people at CHOP about OMOP common data model
  • Spoke with Thea Singer about a profile for the Rappaport Foundation proposal
  • Updated phenotypic models with feature and permutation importances. Notebook is here
    • still having difficulty loading the images – need to figure this out.
  • Put together a short proposal/presentation for CHOP meeting, will present in Monday meeting

Questions

  • Training and test data for predictive modeling: all participants or filter for particular disorders?
  • Can we ask CHOP collaborators for more unstructured data for clinicalBERT model?